Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DXC78_01100 | DXC78_11280 | GCA_000420345_00135 | GCA_000420345_01932 | Unannotated protein. | Unannotated protein. | 0.566 |
DXC78_01100 | GCA_000420345_00267 | GCA_000420345_00135 | GCA_000420345_00267 | Unannotated protein. | Unannotated protein. | 0.464 |
DXC78_01100 | acpP | GCA_000420345_00135 | GCA_000420345_00689 | Unannotated protein. | Unannotated protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family. | 0.497 |
DXC78_05630 | DXC78_05840 | GCA_000420345_00795 | GCA_000420345_01592 | Unannotated protein. | Unannotated protein; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. | 0.645 |
DXC78_05630 | DXC78_11280 | GCA_000420345_00795 | GCA_000420345_01932 | Unannotated protein. | Unannotated protein. | 0.645 |
DXC78_05630 | GCA_000420345_00267 | GCA_000420345_00795 | GCA_000420345_00267 | Unannotated protein. | Unannotated protein. | 0.537 |
DXC78_05630 | acpP | GCA_000420345_00795 | GCA_000420345_00689 | Unannotated protein. | Unannotated protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family. | 0.645 |
DXC78_05630 | infB | GCA_000420345_00795 | GCA_000420345_00105 | Unannotated protein. | Unannotated protein; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | 0.616 |
DXC78_05630 | rpsQ | GCA_000420345_00795 | GCA_000420345_00462 | Unannotated protein. | Unannotated protein; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.888 |
DXC78_05630 | ybeY | GCA_000420345_00795 | GCA_000420345_00194 | Unannotated protein. | Unannotated protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.911 |
DXC78_05840 | DXC78_05630 | GCA_000420345_01592 | GCA_000420345_00795 | Unannotated protein; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. | Unannotated protein. | 0.645 |
DXC78_05840 | DXC78_11280 | GCA_000420345_01592 | GCA_000420345_01932 | Unannotated protein; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. | Unannotated protein. | 0.654 |
DXC78_05840 | GCA_000420345_00267 | GCA_000420345_01592 | GCA_000420345_00267 | Unannotated protein; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. | Unannotated protein. | 0.535 |
DXC78_05840 | acpP | GCA_000420345_01592 | GCA_000420345_00689 | Unannotated protein; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. | Unannotated protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family. | 0.654 |
DXC78_05840 | infB | GCA_000420345_01592 | GCA_000420345_00105 | Unannotated protein; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. | Unannotated protein; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | 0.625 |
DXC78_05840 | rpsQ | GCA_000420345_01592 | GCA_000420345_00462 | Unannotated protein; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. | Unannotated protein; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.603 |
DXC78_05840 | ybeY | GCA_000420345_01592 | GCA_000420345_00194 | Unannotated protein; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. | Unannotated protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.634 |
DXC78_11280 | DXC78_01100 | GCA_000420345_01932 | GCA_000420345_00135 | Unannotated protein. | Unannotated protein. | 0.566 |
DXC78_11280 | DXC78_05630 | GCA_000420345_01932 | GCA_000420345_00795 | Unannotated protein. | Unannotated protein. | 0.645 |
DXC78_11280 | DXC78_05840 | GCA_000420345_01932 | GCA_000420345_01592 | Unannotated protein. | Unannotated protein; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. | 0.654 |
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