Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DXC78_00385 | cysS | GCA_000420345_00431 | GCA_000420345_00428 | Unannotated protein. | Unannotated protein; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.717 |
DXC78_00385 | mrnC | GCA_000420345_00431 | GCA_000420345_00429 | Unannotated protein. | Unannotated protein; Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors; Belongs to the MrnC RNase family. | 0.737 |
DXC78_00385 | rlmB | GCA_000420345_00431 | GCA_000420345_00430 | Unannotated protein. | Unannotated protein; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | 0.713 |
DXC78_01535 | DXC78_06170 | GCA_000420345_00216 | GCA_000420345_00090 | Unannotated protein. | Unannotated protein. | 0.674 |
DXC78_01535 | mrnC | GCA_000420345_00216 | GCA_000420345_00429 | Unannotated protein. | Unannotated protein; Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors; Belongs to the MrnC RNase family. | 0.659 |
DXC78_02040 | cysS | GCA_000420345_00596 | GCA_000420345_00428 | Unannotated protein. | Unannotated protein; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.776 |
DXC78_02040 | mrnC | GCA_000420345_00596 | GCA_000420345_00429 | Unannotated protein. | Unannotated protein; Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors; Belongs to the MrnC RNase family. | 0.786 |
DXC78_02040 | rlmB | GCA_000420345_00596 | GCA_000420345_00430 | Unannotated protein. | Unannotated protein; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | 0.577 |
DXC78_02040 | rplC | GCA_000420345_00596 | GCA_000420345_00471 | Unannotated protein. | Unannotated protein; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.850 |
DXC78_02040 | rplU | GCA_000420345_00596 | GCA_000420345_00257 | Unannotated protein. | Unannotated protein; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.822 |
DXC78_02040 | rpmA | GCA_000420345_00596 | GCA_000420345_00255 | Unannotated protein. | Unannotated protein; Belongs to the bacterial ribosomal protein bL27 family. | 0.825 |
DXC78_02040 | rpmG | GCA_000420345_00596 | GCA_000420345_00440 | Unannotated protein. | Unannotated protein; Belongs to the bacterial ribosomal protein bL33 family. | 0.737 |
DXC78_06170 | DXC78_01535 | GCA_000420345_00090 | GCA_000420345_00216 | Unannotated protein. | Unannotated protein. | 0.674 |
DXC78_06170 | mrnC | GCA_000420345_00090 | GCA_000420345_00429 | Unannotated protein. | Unannotated protein; Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors; Belongs to the MrnC RNase family. | 0.775 |
DXC78_06170 | rplC | GCA_000420345_00090 | GCA_000420345_00471 | Unannotated protein. | Unannotated protein; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.608 |
DXC78_06170 | rplU | GCA_000420345_00090 | GCA_000420345_00257 | Unannotated protein. | Unannotated protein; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.619 |
DXC78_06170 | rpmA | GCA_000420345_00090 | GCA_000420345_00255 | Unannotated protein. | Unannotated protein; Belongs to the bacterial ribosomal protein bL27 family. | 0.617 |
DXC78_06170 | rpmG | GCA_000420345_00090 | GCA_000420345_00440 | Unannotated protein. | Unannotated protein; Belongs to the bacterial ribosomal protein bL33 family. | 0.615 |
cysS | DXC78_00385 | GCA_000420345_00428 | GCA_000420345_00431 | Unannotated protein; Belongs to the class-I aminoacyl-tRNA synthetase family. | Unannotated protein. | 0.717 |
cysS | DXC78_02040 | GCA_000420345_00428 | GCA_000420345_00596 | Unannotated protein; Belongs to the class-I aminoacyl-tRNA synthetase family. | Unannotated protein. | 0.776 |
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