Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DXC78_01535 | holA | GCA_000420345_00216 | GCA_000420345_00209 | Unannotated protein. | Unannotated protein. | 0.473 |
DXC78_01535 | polC | GCA_000420345_00216 | GCA_000420345_00910 | Unannotated protein. | Unannotated protein; Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.683 |
DXC78_03250 | coaD | GCA_000420345_00914 | GCA_000420345_00912 | Unannotated protein; Belongs to the SEDS family. | Unannotated protein; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. | 0.804 |
DXC78_03250 | polC | GCA_000420345_00914 | GCA_000420345_00910 | Unannotated protein; Belongs to the SEDS family. | Unannotated protein; Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.774 |
DXC78_03250 | rnc | GCA_000420345_00914 | GCA_000420345_00911 | Unannotated protein; Belongs to the SEDS family. | Unannotated protein; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | 0.821 |
DXC78_03250 | rsmD | GCA_000420345_00914 | GCA_000420345_00913 | Unannotated protein; Belongs to the SEDS family. | Unannotated protein. | 0.809 |
DXC78_07825 | DXC78_08920 | GCA_000420345_01712 | GCA_000420345_00260 | Unannotated protein. | Unannotated protein. | 0.985 |
DXC78_07825 | dnaN | GCA_000420345_01712 | GCA_000420345_01341 | Unannotated protein. | Unannotated protein; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of replication [...] | 0.982 |
DXC78_07825 | dnaX | GCA_000420345_01712 | GCA_000420345_01728 | Unannotated protein. | Unannotated protein; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.905 |
DXC78_07825 | holA | GCA_000420345_01712 | GCA_000420345_00209 | Unannotated protein. | Unannotated protein. | 0.985 |
DXC78_07825 | polC | GCA_000420345_01712 | GCA_000420345_00910 | Unannotated protein. | Unannotated protein; Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.883 |
DXC78_08920 | DXC78_07825 | GCA_000420345_00260 | GCA_000420345_01712 | Unannotated protein. | Unannotated protein. | 0.985 |
DXC78_08920 | dnaN | GCA_000420345_00260 | GCA_000420345_01341 | Unannotated protein. | Unannotated protein; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of replication [...] | 0.992 |
DXC78_08920 | dnaX | GCA_000420345_00260 | GCA_000420345_01728 | Unannotated protein. | Unannotated protein; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.986 |
DXC78_08920 | holA | GCA_000420345_00260 | GCA_000420345_00209 | Unannotated protein. | Unannotated protein. | 0.991 |
DXC78_08920 | polC | GCA_000420345_00260 | GCA_000420345_00910 | Unannotated protein. | Unannotated protein; Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.886 |
coaD | DXC78_03250 | GCA_000420345_00912 | GCA_000420345_00914 | Unannotated protein; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. | Unannotated protein; Belongs to the SEDS family. | 0.804 |
coaD | polC | GCA_000420345_00912 | GCA_000420345_00910 | Unannotated protein; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. | Unannotated protein; Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.769 |
coaD | rnc | GCA_000420345_00912 | GCA_000420345_00911 | Unannotated protein; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. | Unannotated protein; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | 0.799 |
coaD | rsmD | GCA_000420345_00912 | GCA_000420345_00913 | Unannotated protein; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. | Unannotated protein. | 0.978 |
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