Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DXC78_00865 | DXC78_00870 | GCA_000420345_01116 | GCA_000420345_01117 | Unannotated protein. | Unannotated protein; Has phosphodiesterase (PDE) activity against cyclic-di-AMP (c-di-AMP); Belongs to the GdpP/PdeA phosphodiesterase family. | 0.829 |
DXC78_00865 | DXC78_00885 | GCA_000420345_01116 | GCA_000420345_01120 | Unannotated protein. | Unannotated protein. | 0.799 |
DXC78_00865 | GCA_000420345_01124 | GCA_000420345_01116 | GCA_000420345_01124 | Unannotated protein. | Unannotated protein. | 0.480 |
DXC78_00865 | atpE | GCA_000420345_01116 | GCA_000420345_01125 | Unannotated protein. | Unannotated protein; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. | 0.451 |
DXC78_00865 | dnaB | GCA_000420345_01116 | GCA_000420345_01119 | Unannotated protein. | Unannotated protein; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. | 0.796 |
DXC78_00865 | rplI | GCA_000420345_01116 | GCA_000420345_01118 | Unannotated protein. | Unannotated protein; Binds to the 23S rRNA. | 0.924 |
DXC78_00865 | rpsF | GCA_000420345_01116 | GCA_000420345_01113 | Unannotated protein. | Unannotated protein; Binds together with S18 to 16S ribosomal RNA. | 0.778 |
DXC78_00865 | rpsR | GCA_000420345_01116 | GCA_000420345_01115 | Unannotated protein. | Unannotated protein; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. | 0.971 |
DXC78_00865 | ssb | GCA_000420345_01116 | GCA_000420345_01114 | Unannotated protein. | Unannotated protein. | 0.588 |
DXC78_00865 | upp | GCA_000420345_01116 | GCA_000420345_01121 | Unannotated protein. | Unannotated protein; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate. | 0.480 |
DXC78_00870 | DXC78_00865 | GCA_000420345_01117 | GCA_000420345_01116 | Unannotated protein; Has phosphodiesterase (PDE) activity against cyclic-di-AMP (c-di-AMP); Belongs to the GdpP/PdeA phosphodiesterase family. | Unannotated protein. | 0.829 |
DXC78_00870 | DXC78_00885 | GCA_000420345_01117 | GCA_000420345_01120 | Unannotated protein; Has phosphodiesterase (PDE) activity against cyclic-di-AMP (c-di-AMP); Belongs to the GdpP/PdeA phosphodiesterase family. | Unannotated protein. | 0.803 |
DXC78_00870 | GCA_000420345_01124 | GCA_000420345_01117 | GCA_000420345_01124 | Unannotated protein; Has phosphodiesterase (PDE) activity against cyclic-di-AMP (c-di-AMP); Belongs to the GdpP/PdeA phosphodiesterase family. | Unannotated protein. | 0.555 |
DXC78_00870 | atpE | GCA_000420345_01117 | GCA_000420345_01125 | Unannotated protein; Has phosphodiesterase (PDE) activity against cyclic-di-AMP (c-di-AMP); Belongs to the GdpP/PdeA phosphodiesterase family. | Unannotated protein; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. | 0.451 |
DXC78_00870 | dnaB | GCA_000420345_01117 | GCA_000420345_01119 | Unannotated protein; Has phosphodiesterase (PDE) activity against cyclic-di-AMP (c-di-AMP); Belongs to the GdpP/PdeA phosphodiesterase family. | Unannotated protein; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. | 0.850 |
DXC78_00870 | rplI | GCA_000420345_01117 | GCA_000420345_01118 | Unannotated protein; Has phosphodiesterase (PDE) activity against cyclic-di-AMP (c-di-AMP); Belongs to the GdpP/PdeA phosphodiesterase family. | Unannotated protein; Binds to the 23S rRNA. | 0.906 |
DXC78_00870 | rpsF | GCA_000420345_01117 | GCA_000420345_01113 | Unannotated protein; Has phosphodiesterase (PDE) activity against cyclic-di-AMP (c-di-AMP); Belongs to the GdpP/PdeA phosphodiesterase family. | Unannotated protein; Binds together with S18 to 16S ribosomal RNA. | 0.582 |
DXC78_00870 | rpsR | GCA_000420345_01117 | GCA_000420345_01115 | Unannotated protein; Has phosphodiesterase (PDE) activity against cyclic-di-AMP (c-di-AMP); Belongs to the GdpP/PdeA phosphodiesterase family. | Unannotated protein; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. | 0.650 |
DXC78_00870 | ssb | GCA_000420345_01117 | GCA_000420345_01114 | Unannotated protein; Has phosphodiesterase (PDE) activity against cyclic-di-AMP (c-di-AMP); Belongs to the GdpP/PdeA phosphodiesterase family. | Unannotated protein. | 0.588 |
DXC78_00870 | upp | GCA_000420345_01117 | GCA_000420345_01121 | Unannotated protein; Has phosphodiesterase (PDE) activity against cyclic-di-AMP (c-di-AMP); Belongs to the GdpP/PdeA phosphodiesterase family. | Unannotated protein; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate. | 0.493 |
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