STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFE38481.1HD domain-containing protein. (165 aa)    
Predicted Functional Partners:
SFE87954.1
Double zinc ribbon.
    
  0.707
SFE48487.1
5-methyltetrahydrofolate--homocysteine methyltransferase.
     
 0.679
SFE38448.1
Hypothetical protein.
       0.642
mnmA
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
       0.574
SFE38380.1
Predicted hydrolase, HD superfamily.
       0.510
SFE38354.1
Transcriptional regulator, BadM/Rrf2 family.
       0.483
SFE49174.1
Glutamate dehydrogenase/glutamate dehydrogenase (NAD(P)+); Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
   
 
  0.476
SFE06736.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
   
   0.472
SFE03923.1
Glutamine synthetase.
    
  0.464
SFE28689.1
Signal transduction histidine kinase.
  
 
 0.454
Your Current Organism:
Succiniclasticum ruminis
NCBI taxonomy Id: 1123323
Other names: S. ruminis DSM 9236, Succiniclasticum ruminis DSM 9236
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.