STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFE85802.1Transporter, YbiR family. (373 aa)    
Predicted Functional Partners:
SFE04078.1
Protein-tyrosine phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
    
 0.796
SFE85828.1
Uncharacterised ACR, YkgG family COG1556.
       0.741
SFE42742.1
Arsenate reductase; Belongs to the ArsC family.
    
 0.602
SFE85778.1
Type II secretion system protein F (GspF).
       0.458
SFE85710.1
Hypothetical protein.
       0.444
SFE85735.1
Hypothetical protein.
       0.444
SFE85757.1
General secretion pathway protein G.
       0.444
SFE47150.1
Transcriptional regulator, ArsR family.
  
  
 0.415
Your Current Organism:
Succiniclasticum ruminis
NCBI taxonomy Id: 1123323
Other names: S. ruminis DSM 9236, Succiniclasticum ruminis DSM 9236
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.