STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ61872.1Glutamate synthase (NADPH/NADH) small chain. (414 aa)    
Predicted Functional Partners:
SHK16272.1
Thioredoxin-like [2Fe-2S] ferredoxin.
 
 
 0.980
SHK38799.1
4Fe-4S dicluster domain-containing protein.
   
 0.976
SHK39193.1
Thioredoxin-like [2Fe-2S] ferredoxin.
   
 0.976
SHK19457.1
NADH:ubiquinone oxidoreductase, NADH-binding subunit (chain F).
   
 0.969
SHJ75557.1
NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein.
   
 0.965
pyrD
Dihydroorotate dehydrogenase (NAD+) catalytic subunit; Catalyzes the conversion of dihydroorotate to orotate.
 0.965
SHK34183.1
NADH-quinone oxidoreductase subunit F.
   
 0.959
rnfB
Electron transport complex protein RnfB; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.
   
 0.951
SHK03203.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
 
 
 0.950
SHJ55923.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
  
 
 0.946
Your Current Organism:
Tepidibacter formicigenes
NCBI taxonomy Id: 1123349
Other names: T. formicigenes DSM 15518, Tepidibacter formicigenes DSM 15518
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