STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ63880.1Fumarate hydratase subunit beta. (183 aa)    
Predicted Functional Partners:
SHJ63913.1
Fumarate hydratase subunit alpha.
 
 0.999
SHJ63846.1
Malate dehydrogenase (oxaloacetate-decarboxylating).
 
 
 0.993
SHJ80452.1
acetyl-CoA carboxylase biotin carboxyl carrier protein; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
    
 0.903
argH
Argininosuccinate lyase.
    
 0.865
SHJ83639.1
Malate/lactate dehydrogenase.
  
 
 0.827
SHJ92786.1
NADPH-dependent glutamate synthase beta chain.
     
 0.802
SHJ55923.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
     
 0.795
SHK03203.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
     
 0.795
SHK09559.1
Oxaloacetate decarboxylase, alpha subunit.
    
 0.745
SHK17431.1
L-aspartate oxidase; Catalyzes the oxidation of L-aspartate to iminoaspartate.
    
  0.670
Your Current Organism:
Tepidibacter formicigenes
NCBI taxonomy Id: 1123349
Other names: T. formicigenes DSM 15518, Tepidibacter formicigenes DSM 15518
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.