STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xylGXylose ABC transporter ATP-binding protein; Part of the ABC transporter complex XylFGH involved in xylose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Xylose importer (TC 3.A.1.2.4) family. (512 aa)    
Predicted Functional Partners:
SHJ80874.1
Ribose transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
 0.997
SHJ94338.1
Xylose-binding protein.
 0.986
SHJ94402.1
Xylose ABC transporter membrane protein; Belongs to the binding-protein-dependent transport system permease family.
 
 0.984
SHJ94431.1
Monosaccharide ABC transporter substrate-binding protein, CUT2 family.
 
 0.971
SHJ80903.1
Ribose-binding protein.
 0.944
rbsD
D-ribose pyranase; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose.
  
  
 0.807
SHJ68906.1
Sugar or nucleoside kinase, ribokinase family.
  
  
 0.703
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
  
  
 0.703
SHJ94500.1
Two-component system, response regulator YesN.
 
    0.681
SHJ94467.1
HAMP domain-containing protein.
 
    0.670
Your Current Organism:
Tepidibacter formicigenes
NCBI taxonomy Id: 1123349
Other names: T. formicigenes DSM 15518, Tepidibacter formicigenes DSM 15518
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