STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ96196.1Two-component system, OmpR family, sensor histidine kinase VicK. (608 aa)    
Predicted Functional Partners:
SHJ96228.1
Two-component system, OmpR family, response regulator VicR.
 0.995
SHJ56931.1
Two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP.
 0.977
SHJ95419.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 0.925
SHJ80431.1
Chemotaxis protein methyltransferase CheR.
   
  0.924
SHJ78897.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 0.919
SHK41335.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 0.906
SHJ76384.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 0.895
SHJ80903.1
Ribose-binding protein.
 
 
 
  0.866
SHK23220.1
Two-component system, cell cycle response regulator DivK.
 
  0.846
SHK58382.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
  
 0.810
Your Current Organism:
Tepidibacter formicigenes
NCBI taxonomy Id: 1123349
Other names: T. formicigenes DSM 15518, Tepidibacter formicigenes DSM 15518
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.