STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK14584.1Hypothetical protein. (147 aa)    
Predicted Functional Partners:
rpsU
Small subunit ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
  
  
 0.983
rpsO
Small subunit ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
   
    0.632
SHK14511.1
Histidine triad (HIT) family protein.
     
 0.594
rpmE
Large subunit ribosomal protein L31; Binds the 23S rRNA.
   
    0.566
SHK14481.1
Threonylcarbamoyladenosine tRNA methylthiotransferase MtaB.
  
    0.542
SHK14653.1
Membrane-bound serine protease (ClpP class).
       0.530
SHK14687.1
Uncharacterized protein YqfA, UPF0365 family.
       0.529
argS
arginyl-tRNA synthetase.
  
    0.451
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
       0.424
rpmF
Large subunit ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.
   
    0.420
Your Current Organism:
Tepidibacter formicigenes
NCBI taxonomy Id: 1123349
Other names: T. formicigenes DSM 15518, Tepidibacter formicigenes DSM 15518
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.