STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK48651.1Germination protein YpeB. (441 aa)    
Predicted Functional Partners:
SHK48677.1
N-acetylmuramoyl-L-alanine amidase.
 
  
 0.965
SHK48732.1
Germination protein, Ger(x)C family.
 
     0.892
SHK48757.1
Spore germination protein.
 
     0.876
SHK48705.1
Stage II sporulation protein R.
 
     0.868
SHK48787.1
Spore germination protein.
 
     0.826
SHK59385.1
Cell Wall Hydrolase.
 
  
 0.729
SHJ64049.1
Spore germination protein KC.
 
     0.727
SHJ64008.1
Spore germination protein KC.
 
     0.705
SHJ47470.1
LysM domain-containing protein.
 
  
 0.680
SHK05909.1
Sporulation lipoprotein, YhcN/YlaJ family.
 
    0.676
Your Current Organism:
Tepidibacter formicigenes
NCBI taxonomy Id: 1123349
Other names: T. formicigenes DSM 15518, Tepidibacter formicigenes DSM 15518
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.