STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK54621.1ATP-binding cassette, subfamily B. (725 aa)    
Predicted Functional Partners:
SHK54589.1
HlyD family secretion protein.
 
 0.988
SHK56303.1
ATP-binding cassette, subfamily B, MsbA.
 
 
0.933
SHJ77568.1
RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 0.747
SHJ85127.1
HlyD family secretion protein.
  
 0.747
SHK28783.1
HlyD family secretion protein.
  
 0.747
SHJ89701.1
Hypothetical protein.
  
  
 0.647
SHK54538.1
Two-component system, AgrA family, sensor histidine kinase AgrC.
       0.492
SHK54558.1
Two component transcriptional regulator, LytTR family.
       0.474
SHJ77644.1
Outer membrane efflux protein.
  
 
 0.472
SHJ85238.1
Outer membrane efflux protein.
  
 
 0.472
Your Current Organism:
Tepidibacter formicigenes
NCBI taxonomy Id: 1123349
Other names: T. formicigenes DSM 15518, Tepidibacter formicigenes DSM 15518
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.