STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EPX81731.1Hypothetical protein; DUF1458. (67 aa)    
Predicted Functional Partners:
EPX81487.1
Putative CsbD protein; Belongs to the UPF0337 (CsbD) family.
   
    0.688
EPX81732.1
Hypothetical protein.
       0.550
EPX80321.1
Twin-arginine translocation pathway signal sequence domain protein.
   
    0.463
EPX80855.1
Hypothetical protein.
   
    0.451
EPX81235.1
Hypothetical protein; COG5507.
   
    0.450
EPX79468.1
Hypothetical protein; DUF1328.
   
    0.450
EPX77901.1
Potassium efflux system KefA protein / Small-conductance mechanosensitive channel.
  
    0.413
Your Current Organism:
Litoreibacter arenae
NCBI taxonomy Id: 1123360
Other names: L. arenae DSM 19593, Litoreibacter arenae DSM 19593, Litoreibacter arenae GA2-M15, Litoreibacter arenae NBRC 106423, Thalassobacter arenae DSM 19593, Thalassobacter sp. GA2-M15
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.