STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EPX80088.1Transamidase GatB domain protein. (152 aa)    
Predicted Functional Partners:
rpsU
SSU ribosomal protein S21p; Belongs to the bacterial ribosomal protein bS21 family.
  
  
 0.900
carA
Carbamoyl-phosphate synthase small chain; Belongs to the CarA family.
       0.702
rpsO
SSU ribosomal protein S15p (S13e); Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
  
    0.649
EPX80086.1
Glycosyl transferase, group 2 family protein.
       0.592
EPX80618.1
LSU ribosomal protein L31p; Belongs to the bacterial ribosomal protein bL31 family.
   
    0.451
EPX80089.1
Alkaline phosphatase.
       0.418
rpmF
LSU ribosomal protein L32p; Belongs to the bacterial ribosomal protein bL32 family.
  
    0.417
Your Current Organism:
Litoreibacter arenae
NCBI taxonomy Id: 1123360
Other names: L. arenae DSM 19593, Litoreibacter arenae DSM 19593, Litoreibacter arenae GA2-M15, Litoreibacter arenae NBRC 106423, Thalassobacter arenae DSM 19593, Thalassobacter sp. GA2-M15
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.