STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF04101.1Membrane fusion protein, adhesin transport system. (452 aa)    
Predicted Functional Partners:
SDF04131.1
ATP-binding cassette, subfamily C, LapB.
 0.994
SDF04152.1
ATP-binding cassette, subfamily C, LapB.
 0.994
macB
Macrolide transport system ATP-binding/permease protein; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
 0.961
SDF13332.1
Outer membrane protein.
 
 0.935
SDG05598.1
Efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family.
  
 0.919
SDG03161.1
Hypothetical protein.
  
 0.906
SDG52783.1
Hemolysin-type calcium-binding repeat-containing protein.
 
 
 0.802
SDF89488.1
Hemolysin-type calcium-binding repeat-containing protein.
 
 
 0.801
SDG39923.1
Serralysin.
 
 
 0.801
SDG61008.1
ATP-binding cassette, subfamily C.
  
 0.801
Your Current Organism:
Thalassobaculum litoreum
NCBI taxonomy Id: 1123362
Other names: Rhodospirillaceae bacterium CL-GR58, T. litoreum DSM 18839, Thalassobaculum litoreum CL-GR58, Thalassobaculum litoreum DSM 18839
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.