STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF23024.1Taurine catabolism dioxygenase TauD, TfdA family. (354 aa)    
Predicted Functional Partners:
SDF42519.1
Sulfopyruvate decarboxylase, alpha subunit.
  
    0.644
SDF50446.1
Sulfopyruvate decarboxylase, alpha subunit.
   
    0.598
SDG46474.1
Sulfopyruvate decarboxylase, alpha subunit.
   
    0.598
SDG32309.1
Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD.
  
  
  0.545
SDF53876.1
Phytanoyl-CoA dioxygenase (PhyH).
  
 
  0.506
SDG35005.1
Protein of unknown function.
  
     0.476
SDF39799.1
Glutamate-1-semialdehyde 2,1-aminomutase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
     0.473
SDF22993.1
Hypothetical protein.
       0.470
SDF06636.1
Hypothetical protein.
   
    0.461
SDF66829.1
N-Dimethylarginine dimethylaminohydrolase.
  
     0.439
Your Current Organism:
Thalassobaculum litoreum
NCBI taxonomy Id: 1123362
Other names: Rhodospirillaceae bacterium CL-GR58, T. litoreum DSM 18839, Thalassobaculum litoreum CL-GR58, Thalassobaculum litoreum DSM 18839
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.