STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF25751.1Peptide/nickel transport system permease protein. (323 aa)    
Predicted Functional Partners:
SDF25765.1
Peptide/nickel transport system permease protein.
 
  0.996
SDG05137.1
Peptide/nickel transport system substrate-binding protein.
 
  0.953
SDG05688.1
Peptide/nickel transport system permease protein.
 
  0.953
SDG32575.1
Peptide/nickel transport system permease protein.
 
  0.953
SDG16330.1
Peptide/nickel transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 0.944
SDG52656.1
Peptide/nickel transport system permease protein.
 
  0.938
SDF50125.1
Peptide/nickel transport system permease protein.
 
  0.935
SDF63665.1
Peptide/nickel transport system permease protein.
 
 
  0.934
SDF78914.1
Peptide/nickel transport system permease protein.
 
 
  0.934
SDF43333.1
Peptide/nickel transport system permease protein.
 
 
  0.933
Your Current Organism:
Thalassobaculum litoreum
NCBI taxonomy Id: 1123362
Other names: Rhodospirillaceae bacterium CL-GR58, T. litoreum DSM 18839, Thalassobaculum litoreum CL-GR58, Thalassobaculum litoreum DSM 18839
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.