STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF29383.1Predicted metal-dependent hydrolase, TIM-barrel fold. (299 aa)    
Predicted Functional Partners:
SDG32385.1
4-hydroxy-tetrahydrodipicolinate synthase; Belongs to the DapA family.
 
  
 0.641
SDF17492.1
L-alanine-DL-glutamate epimerase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
  
 0.603
SDF29395.1
Acyl-CoA thioesterase FadM.
       0.590
SDF29423.1
Putative acetyltransferase.
       0.590
SDF74548.1
4-hydroxy-tetrahydrodipicolinate synthase; Belongs to the DapA family.
  
  
 0.589
SDF76186.1
4-hydroxy-tetrahydrodipicolinate synthase; Belongs to the DapA family.
  
  
 0.589
SDF04302.1
Hypothetical protein.
     
 0.583
SDF41952.1
Anaerobic selenocysteine-containing dehydrogenase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
     
 0.583
SDG15551.1
Ferredoxin-NADP reductase.
     
 0.583
SDG36727.1
Hypothetical protein.
     
 0.583
Your Current Organism:
Thalassobaculum litoreum
NCBI taxonomy Id: 1123362
Other names: Rhodospirillaceae bacterium CL-GR58, T. litoreum DSM 18839, Thalassobaculum litoreum CL-GR58, Thalassobaculum litoreum DSM 18839
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.