STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF42519.1Sulfopyruvate decarboxylase, alpha subunit. (171 aa)    
Predicted Functional Partners:
SDF42539.1
Thiamine pyrophosphate enzyme, C-terminal TPP binding domain.
 
  
  0.965
SDF50477.1
Thiamine pyrophosphate enzyme, C-terminal TPP binding domain.
 
  
  0.874
SDG46508.1
Thiamine pyrophosphate enzyme, C-terminal TPP binding domain.
 
     0.786
SDF42552.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
       0.737
SDF42439.1
2-Methylisocitrate lyase, PEP mutase family.
    
 0.658
SDF23024.1
Taurine catabolism dioxygenase TauD, TfdA family.
  
    0.644
SDG16755.1
Glyoxylase, beta-lactamase superfamily II.
  
     0.607
SDF50237.1
Taurine catabolism dioxygenase TauD, TfdA family.
   
    0.598
SDG23386.1
Taurine catabolism dioxygenase TauD, TfdA family.
   
    0.598
SDF74441.1
Malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+).
   
    0.580
Your Current Organism:
Thalassobaculum litoreum
NCBI taxonomy Id: 1123362
Other names: Rhodospirillaceae bacterium CL-GR58, T. litoreum DSM 18839, Thalassobaculum litoreum CL-GR58, Thalassobaculum litoreum DSM 18839
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.