STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF54869.1comF family protein. (247 aa)    
Predicted Functional Partners:
SDG43302.1
DNA processing protein.
 
 
 0.931
SDG43077.1
Signal transduction histidine kinase.
  
  
 0.899
SDG38839.1
Competence protein ComEC.
 
  
 0.892
SDF27223.1
DNA repair protein RadC; Belongs to the UPF0758 family.
 
    0.879
purD
Phosphoribosylamine--glycine ligase; Belongs to the GARS family.
    
  0.837
SDF73687.1
Magnesium chelatase, subunit ChlI C-terminal.
 
  
 0.816
SDF73554.1
Mg chelatase-related protein.
 
  
 0.813
SDG26851.1
Flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
   
   0.788
SDG10785.1
Cyclohexadieny/prephenate dehydrogenase.
   
  
 0.775
SDG39795.1
Flagellar basal-body rod protein FlgC.
   
   0.773
Your Current Organism:
Thalassobaculum litoreum
NCBI taxonomy Id: 1123362
Other names: Rhodospirillaceae bacterium CL-GR58, T. litoreum DSM 18839, Thalassobaculum litoreum CL-GR58, Thalassobaculum litoreum DSM 18839
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.