STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF63555.1Polysaccharide deacetylase. (305 aa)    
Predicted Functional Partners:
SDG26234.1
Hypothetical protein.
 
     0.704
SDF07942.1
Hypothetical protein.
  
     0.664
SDF67338.1
Pyruvate dehydrogenase E1 component; Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).
  
  
  0.630
SDF57240.1
Glycosyltransferase, GT2 family.
  
 
 0.629
SDG16200.1
Glycosyltransferase Alg8.
  
 
 0.605
SDG07876.1
Predicted amidohydrolase.
  
    0.493
SDF63529.1
Predicted metal-dependent hydrolase, TIM-barrel fold.
       0.457
SDF63502.1
Hypothetical protein.
 
    0.434
SDF29722.1
Dolichyl-phosphate-mannose-protein mannosyltransferase.
  
 
  0.427
SDF94676.1
4-amino-4-deoxy-L-arabinose transferase.
  
 
  0.427
Your Current Organism:
Thalassobaculum litoreum
NCBI taxonomy Id: 1123362
Other names: Rhodospirillaceae bacterium CL-GR58, T. litoreum DSM 18839, Thalassobaculum litoreum CL-GR58, Thalassobaculum litoreum DSM 18839
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