STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF64316.14-hydroxybenzoate polyprenyltransferase; Belongs to the UbiA prenyltransferase family. (474 aa)    
Predicted Functional Partners:
SDF64408.1
L-gulonolactone oxidase.
 
  
 0.975
SDF64431.1
Hypothetical protein.
 
  
 0.953
SDF64478.1
UDP-galactopyranose mutase.
 
   
 0.912
SDF64449.1
Nucleoside-diphosphate-sugar epimerase.
 
  
 0.901
SDF64497.1
Putative flippase GtrA (transmembrane translocase of bactoprenol-linked glucose).
      0.896
atpD
ATP synthase F1 subcomplex beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
   
 0.766
SDF64522.1
Hypothetical protein.
       0.755
SDF64545.1
Protein of unknown function.
       0.741
SDF27009.1
Magnesium chelatase subunit D.
  
  
 0.702
bchB
Ferredoxin protochlorophyllide reductase subunit B; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (BchN-BchB) is the catalytic component of the complex.
  
 
 0.698
Your Current Organism:
Thalassobaculum litoreum
NCBI taxonomy Id: 1123362
Other names: Rhodospirillaceae bacterium CL-GR58, T. litoreum DSM 18839, Thalassobaculum litoreum CL-GR58, Thalassobaculum litoreum DSM 18839
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