STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF67364.1Homogentisate 1,2-dioxygenase. (456 aa)    
Predicted Functional Partners:
SDF42689.1
4-hydroxyphenylpyruvate dioxygenase.
 
 0.991
SDG02136.1
Fumarylacetoacetate hydrolase.
 
 0.989
SDF93694.1
4-hydroxyphenylpyruvate dioxygenase.
 
 0.963
SDG04695.1
Phenylalanine 4-hydroxylase.
 
  
 0.937
SDG35005.1
Protein of unknown function.
 
 0.867
SDG35023.1
Protein of unknown function.
 
 0.865
SDF06557.1
Protein of unknown function.
  
 0.848
SDF67390.1
PAS domain-containing protein.
       0.773
SDG10859.1
Fumarylpyruvate hydrolase.
  
 
 0.757
SDF27680.1
4a-hydroxytetrahydrobiopterin dehydratase.
  
  
 0.723
Your Current Organism:
Thalassobaculum litoreum
NCBI taxonomy Id: 1123362
Other names: Rhodospirillaceae bacterium CL-GR58, T. litoreum DSM 18839, Thalassobaculum litoreum CL-GR58, Thalassobaculum litoreum DSM 18839
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.