STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF67406.1TRAP-type C4-dicarboxylate transport system, substrate-binding protein. (326 aa)    
Predicted Functional Partners:
SDF67431.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
 
 0.941
SDF67619.1
TRAP transporter, DctM subunit.
 
 
 0.923
SDF89177.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
 
 0.873
SDF89195.1
TRAP transporter, DctM subunit.
 
 
 0.835
SDF58088.1
TRAP-type mannitol/chloroaromatic compound transport system, substrate-binding protein.
  
  
 0.767
SDG03975.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
 
 0.717
SDF09243.1
TRAP-type mannitol/chloroaromatic compound transport system, substrate-binding protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
     
 0.708
SDF37647.1
TRAP-type mannitol/chloroaromatic compound transport system, substrate-binding protein.
     
 0.708
SDF37663.1
TRAP-type mannitol/chloroaromatic compound transport system, substrate-binding protein.
     
 0.708
SDF64823.1
Tat (twin-arginine translocation) pathway signal sequence.
     
 0.708
Your Current Organism:
Thalassobaculum litoreum
NCBI taxonomy Id: 1123362
Other names: Rhodospirillaceae bacterium CL-GR58, T. litoreum DSM 18839, Thalassobaculum litoreum CL-GR58, Thalassobaculum litoreum DSM 18839
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.