STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF87195.1Putative lipoprotein. (258 aa)    
Predicted Functional Partners:
SDF37557.1
Methylase of chemotaxis methyl-accepting proteins.
   
 0.906
htpG
Molecular chaperone HtpG; Molecular chaperone. Has ATPase activity.
   
 0.895
SDG58866.1
SNF2 family N-terminal domain-containing protein.
    
 0.892
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.883
SDF31122.1
Hypothetical chaperone protein.
   
 0.845
dnaK
Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
   
 0.845
SDF40246.1
Signal transduction histidine kinase.
   
 0.815
SDF57898.1
Signal transduction histidine kinase.
   
 0.815
SDF28133.1
Tetratricopeptide repeat-containing protein.
  
 0.793
SDF57668.1
Tetratricopeptide (TPR) repeat.
  
 0.793
Your Current Organism:
Thalassobaculum litoreum
NCBI taxonomy Id: 1123362
Other names: Rhodospirillaceae bacterium CL-GR58, T. litoreum DSM 18839, Thalassobaculum litoreum CL-GR58, Thalassobaculum litoreum DSM 18839
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.