STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG15283.1NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family. (237 aa)    
Predicted Functional Partners:
SDG15306.1
ChrR Cupin-like domain-containing protein.
 
  
  0.878
SDF28133.1
Tetratricopeptide repeat-containing protein.
  
 0.830
SDF57668.1
Tetratricopeptide (TPR) repeat.
  
 0.830
SDF45719.1
Arylsulfatase A.
   
  0.827
SDG20119.1
Choline-sulfatase.
   
  0.827
SDG17880.1
DNA repair exonuclease SbcCD nuclease subunit.
    
  0.823
SDF63964.1
Flp pilus assembly protein TadD, contains TPR repeats.
    
  0.807
SDF64000.1
Hypothetical protein.
    
  0.807
SDG27456.1
Hypothetical protein.
    
  0.807
SDG03298.1
Protein tyrosine/serine phosphatase.
    
  0.785
Your Current Organism:
Thalassobaculum litoreum
NCBI taxonomy Id: 1123362
Other names: Rhodospirillaceae bacterium CL-GR58, T. litoreum DSM 18839, Thalassobaculum litoreum CL-GR58, Thalassobaculum litoreum DSM 18839
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.