STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG26160.1methylglutaconyl-CoA hydratase. (267 aa)    
Predicted Functional Partners:
SDF41698.1
hydroxymethylglutaryl-CoA lyase.
 
 0.993
SDF51359.1
hydroxymethylglutaryl-CoA lyase.
 
 0.986
SDG26177.1
3-methylcrotonyl-CoA carboxylase beta subunit.
 
 0.967
SDG43077.1
Signal transduction histidine kinase.
    
 0.962
SDF40246.1
Signal transduction histidine kinase.
   
 0.961
SDF57898.1
Signal transduction histidine kinase.
   
 0.961
SDF37557.1
Methylase of chemotaxis methyl-accepting proteins.
   
 0.959
SDF51266.1
Hypothetical protein.
    
  0.942
SDF64752.1
Signal transduction histidine kinase.
    
  0.942
SDF93580.1
Hpt domain-containing protein.
    
  0.942
Your Current Organism:
Thalassobaculum litoreum
NCBI taxonomy Id: 1123362
Other names: Rhodospirillaceae bacterium CL-GR58, T. litoreum DSM 18839, Thalassobaculum litoreum CL-GR58, Thalassobaculum litoreum DSM 18839
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.