STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
betITranscriptional regulator BetI; Repressor involved in choline regulation of the bet genes. (196 aa)    
Predicted Functional Partners:
TH3_10840
TetR family transcriptional regulator; COG1012 NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family.
     0.825
TH3_10850
Choline ABC transporter periplasmic protein; COG2113 ABC-type proline/glycine betaine transport systems, periplasmic components.
 
     0.774
TH3_10835
Choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate.
 
  
 0.699
TH3_15570
Choline ABC transporter periplasmic protein; COG2113 ABC-type proline/glycine betaine transport systems, periplasmic components.
 
     0.664
TH3_13440
COG1309 Transcriptional regulator.
  
     0.530
TH3_10860
COG4175 ABC-type proline/glycine betaine transport system, ATPase component.
 
     0.522
TH3_10855
Choline ABC transporter permease; COG4176 ABC-type proline/glycine betaine transport system, permease component.
 
     0.451
TH3_13815
COG1020 Non-ribosomal peptide synthetase modules and related proteins.
     
 0.443
TH3_10830
COG1760 L-serine deaminase.
       0.440
Your Current Organism:
Thalassospira xiamenensis
NCBI taxonomy Id: 1123366
Other names: T. xiamenensis M-5 = DSM 17429, Thalassospira xiamenensis DSM 17429, Thalassospira xiamenensis DSM 17429 = M-5, Thalassospira xiamenensis M-5, Thalassospira xiamenensis M-5 = DSM 17429, marine bacterium M-5
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