STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TH3_13300COG0438 Glycosyltransferase. (387 aa)    
Predicted Functional Partners:
TH3_19165
Polysaccharide biosynthesis protein CapD; COG1086 Predicted nucleoside-diphosphate sugar epimerases.
 
  
 0.759
TH3_19545
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; COG2148 Sugar transferases involved in lipopolysaccharide synthesis.
  
 0.732
TH3_04385
COG0677 UDP-N-acetyl-D-mannosaminuronate dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
 
  
 0.683
TH3_12070
COG1004 Predicted UDP-glucose 6-dehydrogenase.
 
  
 0.626
TH3_12685
COG0367 Asparagine synthase (glutamine-hydrolyzing).
 
  
 0.621
TH3_15255
UDP-galacturonate 4-epimerase; COG0451 Nucleoside-diphosphate-sugar epimerases.
 
  
 0.613
TH3_00070
COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.578
TH3_13305
Oxidoreductase domain-containing protein; COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases.
 
  
 0.538
TH3_13815
COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
 
 0.531
TH3_13320
COG0381 UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
 
  
 0.512
Your Current Organism:
Thalassospira xiamenensis
NCBI taxonomy Id: 1123366
Other names: T. xiamenensis M-5 = DSM 17429, Thalassospira xiamenensis DSM 17429, Thalassospira xiamenensis DSM 17429 = M-5, Thalassospira xiamenensis M-5, Thalassospira xiamenensis M-5 = DSM 17429, marine bacterium M-5
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