STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TH3_14115Transcriptional regulator RpiR family protein; COG1737 Transcriptional regulators. (274 aa)    
Predicted Functional Partners:
TH3_14095
Myo-inositol catabolism protein; COG0524 Sugar kinases, ribokinase family.
 
   
 0.872
TH3_14080
Hypothetical protein; COG3718 Uncharacterized enzyme involved in inositol metabolism.
 
   
 0.849
TH3_14090
Thiamine pyrophosphate-requiring enzyme; COG3962 Acetolactate synthase; Belongs to the TPP enzyme family.
 
   
 0.848
TH3_14120
COG0673 Predicted dehydrogenases and related proteins.
 
     0.846
TH3_14085
Xylose isomerase domain-containing protein; COG1082 Sugar phosphate isomerases/epimerases.
 
   
 0.845
TH3_14110
Periplasmic-binding protein/LacI transcriptional regulator; COG1879 ABC-type sugar transport system, periplasmic component.
 
  
 0.811
TH3_14075
Oxidoreductase domain-containing protein; COG0673 Predicted dehydrogenases and related proteins.
 
     0.704
TH3_14100
ABC transporter ATP-binding protein; COG1129 ABC-type sugar transport system, ATPase component.
 
     0.684
TH3_14105
Inner-membrane translocator; COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components.
 
  
 0.684
TH3_09085
SIS domain-containing protein; COG1737 Transcriptional regulators.
 
     0.512
Your Current Organism:
Thalassospira xiamenensis
NCBI taxonomy Id: 1123366
Other names: T. xiamenensis M-5 = DSM 17429, Thalassospira xiamenensis DSM 17429, Thalassospira xiamenensis DSM 17429 = M-5, Thalassospira xiamenensis M-5, Thalassospira xiamenensis M-5 = DSM 17429, marine bacterium M-5
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