STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TH3_18625RNA polymerase sigma-54 factor; COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily. (325 aa)    
Predicted Functional Partners:
TH3_18620
Integral membrane protein; COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily.
 
    
0.796
TH3_18630
Integral membrane protein; COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily.
 
    
0.791
TH3_18615
Leucine responsive regulatory protein; COG1522 Transcriptional regulators.
       0.524
TH3_14835
Hypothetical protein; COG0577 ABC-type antimicrobial peptide transport system, permease component.
   
    0.474
TH3_18635
3-hydroxyacyl-CoA dehydrogenase (short-chain); COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
       0.464
Your Current Organism:
Thalassospira xiamenensis
NCBI taxonomy Id: 1123366
Other names: T. xiamenensis M-5 = DSM 17429, Thalassospira xiamenensis DSM 17429, Thalassospira xiamenensis DSM 17429 = M-5, Thalassospira xiamenensis M-5, Thalassospira xiamenensis M-5 = DSM 17429, marine bacterium M-5
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