STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH28495.1Protein involved in polysaccharide export, contains SLBB domain of the beta-grasp fold. (924 aa)    
Predicted Functional Partners:
SHH28518.1
Capsular exopolysaccharide family.
  
 0.999
SHH43729.1
O-antigen ligase.
 
  
 0.882
SHH26796.1
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase.
 
 
 0.848
SHH15891.1
NDP-sugar epimerase, includes UDP-GlcNAc-inverting 4,6-dehydratase FlaA1 and capsular polysaccharide biosynthesis protein EpsC.
  
 
 0.827
SHH29013.1
Repeat domain-containing protein.
 
   
 0.787
SHH37857.1
PGAP1-like protein.
  
     0.763
SHH28321.1
Putative ABC transport system permease protein.
 
    0.761
SHH20048.1
Hypothetical protein.
  
     0.756
SHH53005.1
ATP-binding protein involved in chromosome partitioning; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
  
 0.748
SHH37368.1
Predicted metal-dependent phosphoesterase TrpH, contains PHP domain.
  
     0.746
Your Current Organism:
Thermosipho atlanticus
NCBI taxonomy Id: 1123380
Other names: T. atlanticus DSM 15807, Thermosipho atlanticus DSM 15807
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.