STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH20213.1D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6); Belongs to the peptidase S11 family. (384 aa)    
Predicted Functional Partners:
SHG56543.1
D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6); Belongs to the peptidase S11 family.
 
  
 
0.873
SHG48712.1
Penicillin-binding protein 1A.
   
 
 0.856
SHG94617.1
Stage V sporulation protein D (sporulation-specific penicillin-binding protein).
 
 0.824
SHH20252.1
Anti-anti-sigma regulatory factor, SpoIIAA; Belongs to the anti-sigma-factor antagonist family.
     
 0.796
SHG78553.1
Peptidoglycan glycosyltransferase.
 
 0.772
SHG56102.1
Penicillin-binding protein, 1A family.
     
 0.761
spoIIAB
Stage II sporulation protein AB (anti-sigma F factor); Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition.
     
 0.716
SHH20315.1
RNA polymerase, sigma subunit, RpoX/SigF; Belongs to the sigma-70 factor family.
 
     0.702
SHG71752.1
Stage V sporulation protein AD.
 
   
 0.612
SHG81401.1
Peptidoglycan glycosyltransferase.
 
 
 0.576
Your Current Organism:
Thermosyntropha lipolytica
NCBI taxonomy Id: 1123382
Other names: T. lipolytica DSM 11003, Thermosyntropha lipolytica DSM 11003
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