STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFC96075.1EPS-associated transcriptional regulator, MarR family. (109 aa)    
Predicted Functional Partners:
SFC95709.1
Transcriptional antiterminator RfaH.
 
     0.590
SFD73915.1
Biotin protein ligase C terminal domain-containing protein.
     
 0.544
SFC96099.1
UDP-N-acetyl-D-galactosamine dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
       0.540
SFD00101.1
Diguanylate cyclase (GGDEF) domain-containing protein.
  
  
 0.507
SFD16805.1
GAF domain-containing protein.
  
  
 0.507
SFD92085.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
  
  
 0.507
SFC96051.1
Predicted nuclease of the RNAse H fold, HicB family.
       0.477
SFC96127.1
ABC-type bacteriocin/lantibiotic exporter, contains an N-terminal double-glycine peptidase domain.
     
 0.468
SFC96153.1
UDP-N-acetylglucosamine 4,6-dehydratase.
       0.451
SFD55215.1
DMSO reductase anchor subunit.
  
  
  0.442
Your Current Organism:
Thiohalospira halophila
NCBI taxonomy Id: 1123397
Other names: T. halophila DSM 15071, Thiohalospira halophila DSM 15071, Thiohalospira halophila HL 3, halophilic bacterium HL 3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.