STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFC98444.1Hypothetical protein. (705 aa)    
Predicted Functional Partners:
SFC98097.1
Type II secretory pathway, component ExeA (predicted ATPase).
       0.446
SFC98125.1
Glutamine amidotransferase domain-containing protein.
       0.446
SFC98153.1
Polysaccharide deacetylase.
       0.446
SFC98177.1
O-antigen ligase like membrane protein.
       0.446
SFC98203.1
Membrane protein involved in the export of O-antigen and teichoic acid.
       0.446
SFC98229.1
phenylacetate-CoA ligase.
       0.446
SFC98260.1
Glycosyltransferase involved in cell wall bisynthesis.
       0.446
SFC98287.1
Glycosyltransferase involved in cell wall bisynthesis.
       0.446
SFC98313.1
Peptidoglycan/xylan/chitin deacetylase, PgdA/CDA1 family.
       0.446
SFC98339.1
Glycosyltransferase involved in cell wall bisynthesis.
       0.446
Your Current Organism:
Thiohalospira halophila
NCBI taxonomy Id: 1123397
Other names: T. halophila DSM 15071, Thiohalospira halophila DSM 15071, Thiohalospira halophila HL 3, halophilic bacterium HL 3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.