STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFD07962.1Type IV fimbrial biogenesis protein FimT. (176 aa)    
Predicted Functional Partners:
SFC94499.1
General secretion pathway protein J.
  
 0.856
SFD14496.1
Type IV pilus assembly protein PilV.
 
  
 0.825
SFD14451.1
Type IV pilus assembly protein PilY1.
 
   
 0.792
SFC94525.1
General secretion pathway protein K.
  
 
 0.774
SFD14481.1
Type IV pilus assembly protein PilW.
 
  
 0.766
SFD56254.1
Tfp pilus assembly protein PilN.
 
  
 0.759
SFD56177.1
Type IV pilus assembly protein PilP.
  
   
 0.731
SFD56219.1
Type IV pilus assembly protein PilO.
 
  
 0.728
SFD33929.1
LysM domain-containing protein.
  
     0.674
SFD01282.1
Type IV pilus assembly protein PilZ.
  
     0.669
Your Current Organism:
Thiohalospira halophila
NCBI taxonomy Id: 1123397
Other names: T. halophila DSM 15071, Thiohalospira halophila DSM 15071, Thiohalospira halophila HL 3, halophilic bacterium HL 3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.