STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFD25650.1Protein of unknown function DUF72. (172 aa)    
Predicted Functional Partners:
SFD25592.1
phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein.
       0.633
SFD25572.1
Phospholipid transport system transporter-binding protein.
       0.625
SFD25607.1
phospholipid/cholesterol/gamma-HCH transport system permease protein.
       0.618
SFD25627.1
phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein.
       0.618
SFD35205.1
Intracellular sulfur oxidation protein, DsrE/DsrF family.
  
     0.618
SFD25541.1
ABC-2 type transport system permease protein.
       0.601
SFD25558.1
ABC-2 type transport system ATP-binding protein.
       0.596
SFD19041.1
Outer membrane protein TolC.
  
     0.588
SFD19023.1
Thioredoxin-related protein.
 
     0.573
murA
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
       0.448
Your Current Organism:
Thiohalospira halophila
NCBI taxonomy Id: 1123397
Other names: T. halophila DSM 15071, Thiohalospira halophila DSM 15071, Thiohalospira halophila HL 3, halophilic bacterium HL 3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.