STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFD31651.1Carboxyl-terminal processing protease; Belongs to the peptidase S41A family. (450 aa)    
Predicted Functional Partners:
SFC93851.1
Hypothetical protein.
  
   0.876
SFD18775.1
Protein of unknown function.
  
   0.876
SFD31693.1
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB.
  
  
 0.851
rppH
Putative (di)nucleoside polyphosphate hydrolase; Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; Belongs to the Nudix hydrolase family. RppH subfamily.
    
 0.728
SFD31620.1
4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis.
     
 0.706
SFC94895.1
N-acetylmuramoyl-L-alanine amidase.
 
  
 0.678
SFD17634.1
Aminopeptidase N.
 
  
 0.661
secD
Preprotein translocase subunit SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.
 
 
  0.660
gpmI
Phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
     
 0.621
pepA
Leucyl aminopeptidase; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.
  
 
 0.600
Your Current Organism:
Thiohalospira halophila
NCBI taxonomy Id: 1123397
Other names: T. halophila DSM 15071, Thiohalospira halophila DSM 15071, Thiohalospira halophila HL 3, halophilic bacterium HL 3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.