STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BWK73_24450Unannotated protein. (231 aa)    
Predicted Functional Partners:
BWK73_04340
Unannotated protein.
       0.791
BWK73_11815
Unannotated protein; Belongs to the heme-copper respiratory oxidase family.
 
     0.774
BWK73_51370
Unannotated protein.
 
     0.772
BWK73_10160
Unannotated protein.
 
     0.764
BWK73_19625
Unannotated protein; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
 
     0.722
BWK73_26550
Unannotated protein.
 
     0.657
cca
Unannotated protein; Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. Also shows phosphatase, 2'-nucleotidase and 2',3'-cyclic phosphodiesterase activities. These phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases.
       0.622
BWK73_26555
Unannotated protein.
 
     0.546
BWK73_05030
Unannotated protein; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
 
   
 0.410
BWK73_22295
Unannotated protein.
  
     0.409
Your Current Organism:
Thiothrix lacustris
NCBI taxonomy Id: 1123401
Other names: T. lacustris DSM 21227, Thiothrix lacustris DSM 21227, Thiothrix sp. BL
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.