STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000621325_02862Unannotated protein. (549 aa)    
Predicted Functional Partners:
GCA_000621325_01582
Unannotated protein.
  
     0.537
BWK73_22340
Unannotated protein.
  
     0.526
GCA_000621325_02861
Unannotated protein.
       0.520
BWK73_16990
Unannotated protein.
       0.489
BWK73_54290
Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily.
       0.489
GCA_000621325_03354
Unannotated protein.
  
     0.484
BWK73_13320
Unannotated protein.
  
     0.479
BWK73_32500
Unannotated protein.
  
     0.478
GCA_000621325_01581
Unannotated protein.
  
     0.471
BWK73_51605
Unannotated protein.
  
     0.455
Your Current Organism:
Thiothrix lacustris
NCBI taxonomy Id: 1123401
Other names: T. lacustris DSM 21227, Thiothrix lacustris DSM 21227, Thiothrix sp. BL
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.