STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHE95469.1RNA polymerase sigma-70 factor, ECF subfamily. (197 aa)    
Predicted Functional Partners:
SHE95447.1
Hypothetical protein.
       0.773
SHE54794.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.749
SHE69162.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.739
SHE44673.1
RNA polymerase sigma-70 factor, TIGR02954 family; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.730
SHF03019.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.724
SHF09158.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.722
SHE47062.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.711
SHE43133.1
RNA polymerase, sigma subunit, SigV; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.705
SHE53281.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.689
SHE68809.1
Protein of unknown function.
  
 
 0.654
Your Current Organism:
Tissierella praeacuta
NCBI taxonomy Id: 1123404
Other names: T. praeacuta DSM 18095, Tissierella praeacuta DSM 18095
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.