STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF07288.1Hypothetical protein. (56 aa)    
Predicted Functional Partners:
SHF07263.1
Hypothetical protein.
     0.954
SHF07313.1
Hypothetical protein.
 
     0.864
SHF07429.1
Hypothetical protein.
 
     0.863
SHF07337.1
C-5 cytosine-specific DNA methylase.
 
     0.803
SHE60752.1
Hypothetical protein.
 
     0.782
SHE60814.1
Hypothetical protein.
 
     0.782
SHE90624.1
Hypothetical protein.
 
     0.782
SHE60915.1
Protein of unknown function.
 
     0.781
SHE92495.1
Protein of unknown function.
 
     0.781
SHF07493.1
Protein of unknown function.
 
     0.781
Your Current Organism:
Tissierella praeacuta
NCBI taxonomy Id: 1123404
Other names: T. praeacuta DSM 18095, Tissierella praeacuta DSM 18095
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.