STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000711795_00973Unannotated protein. (156 aa)    
Predicted Functional Partners:
GCA_000711795_00974
Unannotated protein.
       0.579
GCA_000711795_00972
Unannotated protein.
       0.577
GCA_000711795_02478
Unannotated protein.
  
     0.572
GCA_000711795_03619
Unannotated protein.
  
     0.494
GCA_000711795_02260
Unannotated protein.
  
     0.460
GCA_000711795_02984
Unannotated protein.
  
     0.445
GCA_000711795_01754
Unannotated protein.
  
     0.427
GCA_000711795_00975
Unannotated protein.
       0.416
GCA_000711795_03760
Unannotated protein.
  
     0.415
Your Current Organism:
Vibrio pacinii
NCBI taxonomy Id: 1123494
Other names: V. pacinii DSM 19139, Vibrio pacinii DSM 19139
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.