STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000711805_02573Unannotated protein. (408 aa)    
Predicted Functional Partners:
GCA_000711805_02572
Unannotated protein.
       0.794
GCA_000711805_02571
Unannotated protein.
       0.594
GCA_000711805_03353
Unannotated protein.
  
     0.526
GCA_000711805_00855
Unannotated protein.
 
     0.509
GCA_000711805_02101
Unannotated protein.
 
   
 0.481
GCA_000711805_03181
Unannotated protein.
 
     0.454
GCA_000711805_03791
Unannotated protein.
 
   
 0.430
GCA_000711805_00781
Unannotated protein.
 
     0.427
GCA_000711805_00857
Unannotated protein.
 
     0.422
GCA_000711805_02570
Unannotated protein.
       0.421
Your Current Organism:
Vibrio rhizosphaerae
NCBI taxonomy Id: 1123497
Other names: V. rhizosphaerae DSM 18581, Vibrio rhizosphaerae DSM 18581
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.