Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SJN56342.1 | prc | VR7878_01724 | VR7878_01754 | Hypothetical protein. | Tail-specific protease precursor; Belongs to the peptidase S41A family. | 0.809 |
envC | prc | VR7878_02841 | VR7878_01754 | Murein hydrolase activator EnvC precursor. | Tail-specific protease precursor; Belongs to the peptidase S41A family. | 0.664 |
hlyA | prc | VR7878_00338 | VR7878_01754 | Hemolysin, chromosomal. | Tail-specific protease precursor; Belongs to the peptidase S41A family. | 0.809 |
metL | prc | VR7878_02302 | VR7878_01754 | Bifunctional aspartokinase/homoserine dehydrogenase 2; In the C-terminal section; belongs to the homoserine dehydrogenase family. | Tail-specific protease precursor; Belongs to the peptidase S41A family. | 0.752 |
metL | thrA | VR7878_02302 | VR7878_01486 | Bifunctional aspartokinase/homoserine dehydrogenase 2; In the C-terminal section; belongs to the homoserine dehydrogenase family. | Bifunctional aspartokinase/homoserine dehydrogenase 1; In the C-terminal section; belongs to the homoserine dehydrogenase family. | 0.990 |
msrC | prc | VR7878_01756 | VR7878_01754 | Free methionine-R-sulfoxide reductase. | Tail-specific protease precursor; Belongs to the peptidase S41A family. | 0.633 |
msrC | proQ | VR7878_01756 | VR7878_01755 | Free methionine-R-sulfoxide reductase. | ProP effector; RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities; Belongs to the ProQ family. | 0.749 |
nlpI | prc | VR7878_00574 | VR7878_01754 | Lipoprotein NlpI precursor; May be involved in cell division. | Tail-specific protease precursor; Belongs to the peptidase S41A family. | 0.902 |
nlpI | proQ | VR7878_00574 | VR7878_01755 | Lipoprotein NlpI precursor; May be involved in cell division. | ProP effector; RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities; Belongs to the ProQ family. | 0.791 |
nlpI | thrA | VR7878_00574 | VR7878_01486 | Lipoprotein NlpI precursor; May be involved in cell division. | Bifunctional aspartokinase/homoserine dehydrogenase 1; In the C-terminal section; belongs to the homoserine dehydrogenase family. | 0.415 |
pepN | prc | VR7878_01752 | VR7878_01754 | Aminopeptidase N. | Tail-specific protease precursor; Belongs to the peptidase S41A family. | 0.696 |
prc | SJN56342.1 | VR7878_01754 | VR7878_01724 | Tail-specific protease precursor; Belongs to the peptidase S41A family. | Hypothetical protein. | 0.809 |
prc | envC | VR7878_01754 | VR7878_02841 | Tail-specific protease precursor; Belongs to the peptidase S41A family. | Murein hydrolase activator EnvC precursor. | 0.664 |
prc | hlyA | VR7878_01754 | VR7878_00338 | Tail-specific protease precursor; Belongs to the peptidase S41A family. | Hemolysin, chromosomal. | 0.809 |
prc | metL | VR7878_01754 | VR7878_02302 | Tail-specific protease precursor; Belongs to the peptidase S41A family. | Bifunctional aspartokinase/homoserine dehydrogenase 2; In the C-terminal section; belongs to the homoserine dehydrogenase family. | 0.752 |
prc | msrC | VR7878_01754 | VR7878_01756 | Tail-specific protease precursor; Belongs to the peptidase S41A family. | Free methionine-R-sulfoxide reductase. | 0.633 |
prc | nlpI | VR7878_01754 | VR7878_00574 | Tail-specific protease precursor; Belongs to the peptidase S41A family. | Lipoprotein NlpI precursor; May be involved in cell division. | 0.902 |
prc | pepN | VR7878_01754 | VR7878_01752 | Tail-specific protease precursor; Belongs to the peptidase S41A family. | Aminopeptidase N. | 0.696 |
prc | proQ | VR7878_01754 | VR7878_01755 | Tail-specific protease precursor; Belongs to the peptidase S41A family. | ProP effector; RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities; Belongs to the ProQ family. | 0.820 |
prc | pta | VR7878_01754 | VR7878_00754 | Tail-specific protease precursor; Belongs to the peptidase S41A family. | Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family. | 0.698 |
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