STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prcTail-specific protease precursor; Belongs to the peptidase S41A family. (668 aa)    
Predicted Functional Partners:
nlpI
Lipoprotein NlpI precursor; May be involved in cell division.
  
 
 
 0.902
proQ
ProP effector; RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities; Belongs to the ProQ family.
  
  
 0.820
hlyA
Hemolysin, chromosomal.
  
  0.809
SJN56342.1
Hypothetical protein.
  
  0.809
thrA
Bifunctional aspartokinase/homoserine dehydrogenase 1; In the C-terminal section; belongs to the homoserine dehydrogenase family.
 
  
  0.767
metL
Bifunctional aspartokinase/homoserine dehydrogenase 2; In the C-terminal section; belongs to the homoserine dehydrogenase family.
 
  
  0.752
pta
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
   
  0.698
pepN
Aminopeptidase N.
    
 0.696
envC
Murein hydrolase activator EnvC precursor.
  
  
 0.664
msrC
Free methionine-R-sulfoxide reductase.
     
 0.633
Your Current Organism:
Vibrio ruber
NCBI taxonomy Id: 1123498
Other names: V. ruber DSM 16370, Vibrio ruber DSM 16370
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