menE protein (Vibrio ruber) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurrence

Coexpression

Experiments

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[Homology]

Score

menE

2-succinylbenzoate--CoA ligase. (477 aa)

Predicted Functional Partners:

lgrD_1

0.989

lgrD_5

0.987

lgrD_3

0.986

eryA

0.982

tycC_1

0.974

menC

0.974

SJN59049.1

0.964

menB

0.964

SJN59050.1

0.955

SJN59051.1

0.955

Your Current Organism:

Vibrio ruber

NCBI taxonomy Id: 1123498
Other names: V. ruber DSM 16370, Vibrio ruber DSM 16370

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SJN59049.1	SJN59050.1	VR7878_03191	VR7878_03192	Phenolphthiocerol synthesis polyketide synthase type I Pks15/1.	Phenolphthiocerol synthesis polyketide synthase type I Pks15/1.	0.999
SJN59049.1	SJN59051.1	VR7878_03191	VR7878_03193	Phenolphthiocerol synthesis polyketide synthase type I Pks15/1.	Phenolphthiocerol synthesis polyketide synthase type I Pks15/1.	0.999
SJN59049.1	eryA	VR7878_03191	VR7878_00988	Phenolphthiocerol synthesis polyketide synthase type I Pks15/1.	Erythronolide synthase, modules 1 and 2.	0.999
SJN59049.1	lgrD_1	VR7878_03191	VR7878_00670	Phenolphthiocerol synthesis polyketide synthase type I Pks15/1.	Linear gramicidin synthase subunit D.	0.999
SJN59049.1	lgrD_3	VR7878_03191	VR7878_03195	Phenolphthiocerol synthesis polyketide synthase type I Pks15/1.	Linear gramicidin synthase subunit D; Belongs to the ATP-dependent AMP-binding enzyme family.	0.999
SJN59049.1	lgrD_5	VR7878_03191	VR7878_03981	Phenolphthiocerol synthesis polyketide synthase type I Pks15/1.	Linear gramicidin synthase subunit D.	0.999
SJN59049.1	menB	VR7878_03191	VR7878_03336	Phenolphthiocerol synthesis polyketide synthase type I Pks15/1.	1,4-Dihydroxy-2-naphthoyl-CoA synthase; Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2- naphthoyl-CoA (DHNA-CoA).	0.758
SJN59049.1	menE	VR7878_03191	VR7878_03334	Phenolphthiocerol synthesis polyketide synthase type I Pks15/1.	2-succinylbenzoate--CoA ligase.	0.964
SJN59049.1	tycC_1	VR7878_03191	VR7878_00461	Phenolphthiocerol synthesis polyketide synthase type I Pks15/1.	Tyrocidine synthase 3.	0.999
SJN59050.1	SJN59049.1	VR7878_03192	VR7878_03191	Phenolphthiocerol synthesis polyketide synthase type I Pks15/1.	Phenolphthiocerol synthesis polyketide synthase type I Pks15/1.	0.999
SJN59050.1	SJN59051.1	VR7878_03192	VR7878_03193	Phenolphthiocerol synthesis polyketide synthase type I Pks15/1.	Phenolphthiocerol synthesis polyketide synthase type I Pks15/1.	0.999
SJN59050.1	eryA	VR7878_03192	VR7878_00988	Phenolphthiocerol synthesis polyketide synthase type I Pks15/1.	Erythronolide synthase, modules 1 and 2.	0.999
SJN59050.1	lgrD_1	VR7878_03192	VR7878_00670	Phenolphthiocerol synthesis polyketide synthase type I Pks15/1.	Linear gramicidin synthase subunit D.	0.999
SJN59050.1	lgrD_3	VR7878_03192	VR7878_03195	Phenolphthiocerol synthesis polyketide synthase type I Pks15/1.	Linear gramicidin synthase subunit D; Belongs to the ATP-dependent AMP-binding enzyme family.	0.999
SJN59050.1	lgrD_5	VR7878_03192	VR7878_03981	Phenolphthiocerol synthesis polyketide synthase type I Pks15/1.	Linear gramicidin synthase subunit D.	0.999
SJN59050.1	menB	VR7878_03192	VR7878_03336	Phenolphthiocerol synthesis polyketide synthase type I Pks15/1.	1,4-Dihydroxy-2-naphthoyl-CoA synthase; Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2- naphthoyl-CoA (DHNA-CoA).	0.741
SJN59050.1	menE	VR7878_03192	VR7878_03334	Phenolphthiocerol synthesis polyketide synthase type I Pks15/1.	2-succinylbenzoate--CoA ligase.	0.955
SJN59050.1	tycC_1	VR7878_03192	VR7878_00461	Phenolphthiocerol synthesis polyketide synthase type I Pks15/1.	Tyrocidine synthase 3.	0.998
SJN59051.1	SJN59049.1	VR7878_03193	VR7878_03191	Phenolphthiocerol synthesis polyketide synthase type I Pks15/1.	Phenolphthiocerol synthesis polyketide synthase type I Pks15/1.	0.999
SJN59051.1	SJN59050.1	VR7878_03193	VR7878_03192	Phenolphthiocerol synthesis polyketide synthase type I Pks15/1.	Phenolphthiocerol synthesis polyketide synthase type I Pks15/1.	0.999