STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yejB_2Inner membrane ABC transporter permease protein YejB. (361 aa)    
Predicted Functional Partners:
yejE_2
Inner membrane ABC transporter permease protein YejE.
 
 0.992
gsiA_5
Glutathione import ATP-binding protein GsiA; Belongs to the ABC transporter superfamily.
 
 
 0.986
appA_2
Oligopeptide-binding protein AppA precursor.
 
 
 0.980
yejE_1
Inner membrane ABC transporter permease protein YejE.
 
 0.944
appA_1
Oligopeptide-binding protein AppA precursor.
 
 
 0.906
gsiA_1
Glutathione import ATP-binding protein GsiA.
 
 
 0.891
SJN59687.1
RNA pyrophosphohydrolase.
       0.791
oppD_2
Oligopeptide transport ATP-binding protein OppD; Belongs to the ABC transporter superfamily.
 
  
 0.656
dppC_1
Dipeptide transport system permease protein DppC.
  
  0.624
oppD_1
Oligopeptide transport ATP-binding protein OppD; Belongs to the ABC transporter superfamily.
  
 0.588
Your Current Organism:
Vibrio ruber
NCBI taxonomy Id: 1123498
Other names: V. ruber DSM 16370, Vibrio ruber DSM 16370
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