STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZBT109_1937Unannotated protein; Belongs to the peptidase S1C family. (568 aa)    
Predicted Functional Partners:
ZBT109_1938
Unannotated protein.
  
 
 0.858
ZBT109_0799
Unannotated protein.
  
 0.693
ZBT109_0364
Unannotated protein.
  
 0.602
ZBT109_2114
Unannotated protein.
  
  
 0.582
ZBT109_0786
Unannotated protein.
     
 0.481
rplI
Unannotated protein; Binds to the 23S rRNA.
 
 
   0.461
ZBT109_0363
Unannotated protein.
   
 0.454
nfuA
Unannotated protein; Involved in iron-sulfur cluster biogenesis. Binds a 4Fe-4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe/S proteins. Could also act as a scaffold/chaperone for damaged Fe/S proteins.
  
 
 0.449
ZBT109_1936
Unannotated protein.
  
    0.442
rsfS
Unannotated protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.
  
   0.440
Your Current Organism:
Zymobacter palmae
NCBI taxonomy Id: 1123510
Other names: Z. palmae DSM 10491, Zymobacter palmae DSM 10491
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.