STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFS05185.1Group 4 capsule polysaccharide lipoprotein gfcB, YjbF. (218 aa)    
Predicted Functional Partners:
SFS05175.1
Exopolysaccharide biosynthesis protein YbjH.
 
     0.950
SFS20163.1
Exopolysaccharide biosynthesis protein YbjH.
 
     0.788
SFS19524.1
Hypothetical protein.
  
     0.668
SFS01107.1
Hypothetical protein.
  
     0.651
SFS05195.1
Hypothetical protein.
       0.513
SFS19034.1
Pre-peptidase C-terminal domain-containing protein.
  
     0.511
SFS02440.1
Hypothetical protein.
  
     0.509
SFS22141.1
Hypothetical protein.
  
     0.502
SFS21504.1
Hypothetical protein.
  
     0.491
SFS06645.1
Sulfotransferase family protein.
  
     0.457
Your Current Organism:
Yoonia litorea
NCBI taxonomy Id: 1123755
Other names: CCUG 62113, DSM 29433, KCTC 23883, Loktanella litorea, Loktanella litorea Yoon et al. 2013, Loktanella sp. DPG-5, Y. litorea, strain DPG-5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.